Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004478.1 Corchorus capsularis cultivar CVL-1 contig04486, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1185
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33


Found at i:101 original size:18 final size:18

Alignment explanation


    Indices: 78--115  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

         68 AATGTTACTA

                              
         78 ACATGTATCAATAATAAG
          1 ACATGTATCAATAATAAG

                              
         96 ACATGTATCAATAATAAG
          1 ACATGTATCAATAATAAG

              
        114 AC
          1 AC

        116 TTATTCTTTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.50, C:0.13, G:0.11, T:0.26


Consensus pattern (18 bp):   
ACATGTATCAATAATAAG

Found at i:838 original size:19 final size:19

Alignment explanation


    Indices: 814--851  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        804 CTTCTTTTTT

                               
        814 TTTCTATTGAACTATTGAA
          1 TTTCTATTGAACTATTGAA

                               
        833 TTTCTATTGAACTATTGAA
          1 TTTCTATTGAACTATTGAA

        852 AAAGAATTCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47


Consensus pattern (19 bp):   
TTTCTATTGAACTATTGAA
Done.