Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004555.1 Corchorus capsularis cultivar CVL-1 contig04566, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3982
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37


Found at i:1212 original size:14 final size:14

Alignment explanation


    Indices: 1188--1225  Score: 51
    Period size: 14  Copynumber: 2.6  Consensus size: 14

       1178 GACCTAGCCG

                            
       1188 CTCCTCTCTCC-CCTT
          1 CTCC-CTCTCCTCC-T

                          
       1203 CTCCCTCTCCTCCT
          1 CTCCCTCTCCTCCT

                     
       1217 CTCCCTCTC
          1 CTCCCTCTC

       1226 TAGTTCTCGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  14   16  0.73
  15    6  0.27

ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37


Consensus pattern (14 bp):   
CTCCCTCTCCTCCT

Found at i:3957 original size:2 final size:2

Alignment explanation


    Indices: 3952--3982  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       3942 TGTGTGTGTG

                                                          
       3952 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.