Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004556.1 Corchorus capsularis cultivar CVL-1 contig04567, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1057
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27


Found at i:1025 original size:25 final size:25

Alignment explanation


    Indices: 972--1022  Score: 81
    Period size: 22  Copynumber: 2.2  Consensus size: 25

        962 GGACTTAGTC

                                     
        972 TATTTATGTATTAAAATTGATGCAA
          1 TATTTATGTATTAAAATTGATGCAA

                                     
        997 TATTTATGTA-TAAAA-T-ATGCAA
          1 TATTTATGTATTAAAATTGATGCAA

                
       1019 TATT
          1 TATT

       1023 ATTAATGACA


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  22   10  0.38
  23    1  0.04
  24    5  0.19
  25   10  0.38

ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45


Consensus pattern (25 bp):   
TATTTATGTATTAAAATTGATGCAA
Done.