Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004566.1 Corchorus capsularis cultivar CVL-1 contig04577, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 879

Length: 1465
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:1252 original size:26 final size:26

Alignment explanation


    Indices: 1216--1267  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1206 AATTAAAGCA

                                      
       1216 ACAAAAATAGTGCACTTTGTTTTAGG
          1 ACAAAAATAGTGCACTTTGTTTTAGG

                                      
       1242 ACAAAAATAGTGCACTTTGTTTTAGG
          1 ACAAAAATAGTGCACTTTGTTTTAGG

       1268 GTTGCCCTCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35


Consensus pattern (26 bp):   
ACAAAAATAGTGCACTTTGTTTTAGG
Done.