Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004569.1 Corchorus capsularis cultivar CVL-1 contig04580, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 752

Length: 1254
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29


Found at i:347 original size:21 final size:20

Alignment explanation


    Indices: 321--376  Score: 85
    Period size: 21  Copynumber: 2.7  Consensus size: 20

        311 AAGACGAGAC

                                
        321 AGTTATAGTATTTAAATTAG
          1 AGTTATAGTATTTAAATTAG

                                 
        341 AGGTTATAGTATTTAAATTAG
          1 A-GTTATAGTATTTAAATTAG

                  *        
        362 AGTATAGAGTATTTA
          1 AGT-TATAGTATTTA

        377 CATAGATTAA


Statistics
Matches: 33,  Mismatches: 1, Indels: 3
        0.89            0.03        0.08

Matches are distributed among these distances:
  20    3  0.09
  21   30  0.91

ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43


Consensus pattern (20 bp):   
AGTTATAGTATTTAAATTAG

Found at i:1112 original size:21 final size:21

Alignment explanation


    Indices: 1086--1127  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1076 TCGCTTCCCA

                                 
       1086 ATGGTATACTCCAGATTCATT
          1 ATGGTATACTCCAGATTCATT

                                 
       1107 ATGGTATACTCCAGATTCATT
          1 ATGGTATACTCCAGATTCATT

       1128 TAGATATCGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38


Consensus pattern (21 bp):   
ATGGTATACTCCAGATTCATT
Done.