Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000457.1 Corchorus capsularis cultivar CVL-1 contig00457, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38


Found at i:555 original size:6 final size:6

Alignment explanation


    Indices: 544--574  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        534 ATAATTGCTA

                                                 
        544 TAGATT TAGATT TAGATT TAGATT TA-ATT TA
          1 TAGATT TAGATT TAGATT TAGATT TAGATT TA

        575 CTTTGCTTAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    5  0.20
   6   20  0.80

ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52


Consensus pattern (6 bp):   
TAGATT

Found at i:892 original size:17 final size:18

Alignment explanation


    Indices: 857--895  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        847 TTTTTCTAAA

                     *    *   
        857 AAAAAAAAATTTGCGTCG
          1 AAAAAAAAAGTTGCATCG

                              
        875 AAAAAAAAAGTTG-ATCG
          1 AAAAAAAAAGTTGCATCG

                
        892 AAAA
          1 AAAA

        896 TAAATTTAAG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  17    7  0.37
  18   12  0.63

ACGTcount: A:0.59, C:0.08, G:0.15, T:0.18


Consensus pattern (18 bp):   
AAAAAAAAAGTTGCATCG
Done.