Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004594.1 Corchorus capsularis cultivar CVL-1 contig04606, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 764

Length: 1274
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30


Found at i:78 original size:27 final size:27

Alignment explanation


    Indices: 1--116  Score: 160
    Period size: 27  Copynumber: 4.1  Consensus size: 27

                                       
          1 ATTCTCTTGAAGCTCATCCTCCGAATC
          1 ATTCTCTTGAAGCTCATCCTCCGAATC

                  *    *                    
         28 ATAATGATCCGCTGAAGCTCATCCTCCGAATC
          1 AT--T-CT-C-TTGAAGCTCATCCTCCGAATC

                                       
         60 ATTCTCTTGAAGCTCATCCTCCGAATC
          1 ATTCTCTTGAAGCTCATCCTCCGAATC

                                        
         87 ATTCTCTTGAAGCTCATCCTCCGAAATC
          1 ATTCTCTTGAAGCTCATCCTCCG-AATC

              
        115 AT
          1 AT

        117 AAATGATCCG


Statistics
Matches: 79,  Mismatches: 4, Indels: 11
        0.84            0.04        0.12

Matches are distributed among these distances:
  27   45  0.57
  28    7  0.09
  29    2  0.03
  30    2  0.03
  31    1  0.01
  32   22  0.28

ACGTcount: A:0.25, C:0.32, G:0.12, T:0.31


Consensus pattern (27 bp):   
ATTCTCTTGAAGCTCATCCTCCGAATC
Done.