Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004626.1 Corchorus capsularis cultivar CVL-1 contig04639, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1210
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:73 original size:16 final size:16

Alignment explanation


    Indices: 52--83  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

         42 ACGGTTCTGG

                            
         52 ATTTTACTAGAAATCA
          1 ATTTTACTAGAAATCA

                            
         68 ATTTTACTAGAAATCA
          1 ATTTTACTAGAAATCA

         84 TATAAGAGCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38


Consensus pattern (16 bp):   
ATTTTACTAGAAATCA
Done.