Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004638.1 Corchorus capsularis cultivar CVL-1 contig04651, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 799

Length: 1333
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30


Found at i:33 original size:19 final size:19

Alignment explanation


    Indices: 9--46  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

          1 GTCATATC

                               
          9 AAATAAATAATAGAATTTT
          1 AAATAAATAATAGAATTTT

                               
         28 AAATAAATAATAGAATTTT
          1 AAATAAATAATAGAATTTT

         47 GTGGGGTTGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37


Consensus pattern (19 bp):   
AAATAAATAATAGAATTTT
Done.