Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004682.1 Corchorus capsularis cultivar CVL-1 contig04698, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1165

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170--205
18
2.0
18
100
0
72
33
16
0
50
1.46
212--278
26
2.6
26
97
0
125
26
1
8
62
1.33
351--408
27
2.0
30
87
9
86
36
3
1
58
1.25
388--421
15
2.3
15
94
0
59
44
0
5
50
1.26
449--557
25
4.6
25
77
17
115
50
2
1
44
1.26
459--554
14
6.9
13
76
16
70
48
3
2
45
1.29
456--554
8
12.9
8
70
12
73
49
3
2
45
1.29
571--645
15
4.7
16
85
9
91
54
1
5
38
1.31
553--649
32
3.2
32
77
10
87
53
1
5
40
1.30

Tables:   1

The End!