Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004693.1 Corchorus capsularis cultivar CVL-1 contig04709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 846

Length: 1410
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:226 original size:19 final size:19

Alignment explanation


    Indices: 202--239  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        192 TACAAAGAAT

                               
        202 TCCATCACAACATAAAAAA
          1 TCCATCACAACATAAAAAA

                               
        221 TCCATCACAACATAAAAAA
          1 TCCATCACAACATAAAAAA

        240 GGGACTTGAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.58, C:0.26, G:0.00, T:0.16


Consensus pattern (19 bp):   
TCCATCACAACATAAAAAA

Found at i:608 original size:20 final size:20

Alignment explanation


    Indices: 583--622  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        573 GCTTGACCAA

                                
        583 TTACCAATTAATAGAAAAAC
          1 TTACCAATTAATAGAAAAAC

                                
        603 TTACCAATTAATAGAAAAAC
          1 TTACCAATTAATAGAAAAAC

        623 AATTCAAGTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.55, C:0.15, G:0.05, T:0.25


Consensus pattern (20 bp):   
TTACCAATTAATAGAAAAAC

Found at i:871 original size:26 final size:26

Alignment explanation


    Indices: 836--887  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        826 TTGAATCGAG

                                      
        836 ATATAAAAAGAAAGTTACCAATAATT
          1 ATATAAAAAGAAAGTTACCAATAATT

                                      
        862 ATATAAAAAGAAAGTTACCAATAATT
          1 ATATAAAAAGAAAGTTACCAATAATT

        888 TAAATACAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.58, C:0.08, G:0.08, T:0.27


Consensus pattern (26 bp):   
ATATAAAAAGAAAGTTACCAATAATT
Done.