Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004698.1 Corchorus capsularis cultivar CVL-1 contig04714, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1696
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:1197 original size:86 final size:86

Alignment explanation


    Indices: 1084--1270  Score: 365
    Period size: 86  Copynumber: 2.2  Consensus size: 86

       1074 CCAACCCTTG

                       *                                                     
       1084 TTGCTTTGTCCATTTGAAATGGATATTTTAAACAGTGGGGGCAATCATTTTAATAGGTTATTTGA
          1 TTGCTTTGTCCTTTTGAAATGGATATTTTAAACAGTGGGGGCAATCATTTTAATAGGTTATTTGA

                                 
       1149 GCCTTCACCGGGTTGCGTCTT
         66 GCCTTCACCGGGTTGCGTCTT

                                                                             
       1170 TTGCTTTGTCCTTTTGAAATGGATATTTTAAACAGTGGGGGCAATCATTTTAATAGGTTATTTGA
          1 TTGCTTTGTCCTTTTGAAATGGATATTTTAAACAGTGGGGGCAATCATTTTAATAGGTTATTTGA

                                 
       1235 GCCTTCACCGGGTTGCGTCTT
         66 GCCTTCACCGGGTTGCGTCTT

                           
       1256 TTGCTTTGTCCTTTT
          1 TTGCTTTGTCCTTTT

       1271 TGCCTACATA


Statistics
Matches: 100,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  86  100  1.00

ACGTcount: A:0.20, C:0.16, G:0.22, T:0.42


Consensus pattern (86 bp):   
TTGCTTTGTCCTTTTGAAATGGATATTTTAAACAGTGGGGGCAATCATTTTAATAGGTTATTTGA
GCCTTCACCGGGTTGCGTCTT

Done.