Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004701.1 Corchorus capsularis cultivar CVL-1 contig04717, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 680

Length: 1134
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:387 original size:22 final size:21

Alignment explanation


    Indices: 348--391  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 21

        338 AAAAAGAATC

                   *     *       
        348 TTTATTATTTATCGTTTTATT
          1 TTTATTAATTATCCTTTTATT

                                  
        369 TTTATTTAATTATCCTTTTATT
          1 TTTA-TTAATTATCCTTTTATT

             
        391 T
          1 T

        392 AATTATTTCG


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  21    4  0.20
  22   16  0.80

ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70


Consensus pattern (21 bp):   
TTTATTAATTATCCTTTTATT
Done.