Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004704.1 Corchorus capsularis cultivar CVL-1 contig04720, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.29

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:734 original size:21 final size:22

Alignment explanation


    Indices: 675--722  Score: 96
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        665 GGACTTAGTC

                                  
        675 TATTTATGTATAAAATATGCAA
          1 TATTTATGTATAAAATATGCAA

                                  
        697 TATTTATGTATAAAATATGCAA
          1 TATTTATGTATAAAATATGCAA

                
        719 TATT
          1 TATT

        723 ATTAAGACAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   26  1.00

ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44


Consensus pattern (22 bp):   
TATTTATGTATAAAATATGCAA
Done.