Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000471.1 Corchorus capsularis cultivar CVL-1 contig00471, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2157
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:522 original size:13 final size:14

Alignment explanation


    Indices: 506--538  Score: 52
    Period size: 13  Copynumber: 2.5  Consensus size: 14

        496 TATAGTATAT

                          
        506 ATAAATATATAA-A
          1 ATAAATATATAATA

                          
        519 ATAAA-ATATAATA
          1 ATAAATATATAATA

                   
        532 ATAAATA
          1 ATAAATA

        539 GTAAGATTAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  12    6  0.33
  13   11  0.61
  14    1  0.06

ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30


Consensus pattern (14 bp):   
ATAAATATATAATA

Done.