Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000472.1 Corchorus capsularis cultivar CVL-1 contig00472, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 695

Length: 1159
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.41

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:766 original size:13 final size:13

Alignment explanation


    Indices: 748--781  Score: 59
    Period size: 13  Copynumber: 2.6  Consensus size: 13

        738 TAATTATTGT

                         
        748 TTGCTTTATTAAA
          1 TTGCTTTATTAAA

                        *
        761 TTGCTTTATTAAT
          1 TTGCTTTATTAAA

                    
        774 TTGCTTTA
          1 TTGCTTTA

        782 GATTTAGATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.24, C:0.09, G:0.09, T:0.59


Consensus pattern (13 bp):   
TTGCTTTATTAAA
Done.