Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000473.1 Corchorus capsularis cultivar CVL-1 contig00473, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11108
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36


Found at i:3184 original size:18 final size:18

Alignment explanation


    Indices: 3161--3196  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       3151 CCGTTTTACG

                              
       3161 ATTCGGTTCGATCGGTTT
          1 ATTCGGTTCGATCGGTTT

                      *       
       3179 ATTCGGTTCGGTCGGTTT
          1 ATTCGGTTCGATCGGTTT

       3197 TTGCACAACC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.08, C:0.17, G:0.31, T:0.44


Consensus pattern (18 bp):   
ATTCGGTTCGATCGGTTT
Done.