Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004761.1 Corchorus capsularis cultivar CVL-1 contig04779, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 611

Length: 1019
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34


Found at i:512 original size:6 final size:6

Alignment explanation


    Indices: 483--514  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        473 ACGATCACGA

                 *                               
        483 TCAAGA TCAAGG TCAAGG TCAAGG TCAAGG TC
          1 TCAAGG TCAAGG TCAAGG TCAAGG TCAAGG TC

        515 TGCATCACCT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19


Consensus pattern (6 bp):   
TCAAGG

Done.