Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004767.1 Corchorus capsularis cultivar CVL-1 contig04785, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11830
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


Found at i:7634 original size:2 final size:2

Alignment explanation


    Indices: 7627--7660  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       7617 CATTTATCCA

                                                              
       7627 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       7661 GAGCTTCGGA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:9740 original size:30 final size:30

Alignment explanation


    Indices: 9706--9766  Score: 77
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       9696 AATGATGTAC

                  *                       
       9706 TTTTTATACCAAAAAAATACAATATCGTAT
          1 TTTTTAGACCAAAAAAATACAATATCGTAT

                 * **    *                
       9736 TTTTTGGGTCAAAGAAATACAATATCGTAT
          1 TTTTTAGACCAAAAAAATACAATATCGTAT

             
       9766 T
          1 T

       9767 AGTAGTAATC


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  30   26  1.00

ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38


Consensus pattern (30 bp):   
TTTTTAGACCAAAAAAATACAATATCGTAT
Done.