Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000477.1 Corchorus capsularis cultivar CVL-1 contig00477, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 803

Length: 1339
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--58  Score: 116
    Period size: 2  Copynumber: 29.0  Consensus size: 2

                                                                          
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                                   
         43 CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT

         59 TATACACACA


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   56  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Found at i:67 original size:2 final size:2

Alignment explanation


    Indices: 62--118  Score: 114
    Period size: 2  Copynumber: 28.5  Consensus size: 2

         52 TCTCTCTTAT

                                                                          
         62 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC

                                  
        104 AC AC AC AC AC AC AC A
          1 AC AC AC AC AC AC AC A

        119 TAATATATAT


Statistics
Matches: 55,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   55  1.00

ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Done.