Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004772.1 Corchorus capsularis cultivar CVL-1 contig04790, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16477

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2700--2774
22
3.4
21
78
10
80
34
18
6
40
1.77
2779--2905
22
5.5
25
75
12
71
30
14
12
42
1.82
2800--2989
22
8.7
22
74
6
97
31
11
13
43
1.79
2795--2989
44
4.5
43
77
4
151
30
12
13
43
1.80
2801--2949
66
2.3
67
81
9
164
32
11
13
42
1.80
5595--5619
6
4.2
6
100
0
50
16
0
16
68
1.22
5708--5756
25
2.0
25
95
0
89
38
16
10
34
1.82
5903--5970
22
3.1
22
82
4
57
41
14
8
35
1.77
5915--5992
22
3.6
21
78
16
70
35
10
11
42
1.75
9481--9532
22
2.5
20
81
12
59
25
5
0
69
1.10
9482--9533
21
2.4
22
83
6
61
23
5
0
71
1.07
9743--9780
11
3.5
11
85
10
51
57
2
0
39
1.12
11400--11450
22
2.3
22
83
6
59
41
19
7
31
1.80
11464--11602
22
6.4
22
73
11
106
40
15
10
34
1.80
11393--11530
72
1.9
72
82
5
172
39
15
10
34
1.82
11481--11601
65
1.9
64
82
5
154
40
15
9
33
1.81
11645--11962
22
14.6
21
65
20
100
33
17
9
39
1.81
11802--11914
44
2.6
44
74
2
111
38
13
8
39
1.76

Tables:   1

The End!