Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01004773.1 Corchorus capsularis cultivar CVL-1 contig04791, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8541
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Found at i:403 original size:2 final size:2
Alignment explanation
Indices: 398--422 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
388 GAAGTTCAAT
398 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
423 TTTACGAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1242 original size:317 final size:320
Alignment explanation
Indices: 630--1454 Score: 886
Period size: 317 Copynumber: 2.6 Consensus size: 320
620 GATTGGAGTA
* * * *
630 AATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAATAT-AAAAACAATATTAAAAGTGCGA
1 AATCTTGTTTCGATTTAATTAGAAATTAATTCA-AAAAATATGAAAAACGATATTAAAAGCGTGA
* * * *
694 AAAGTCCTCCAATCTTTTTGGCGTTAAATTATATATATTTCATGAGTATTTTAGCTAAAAATTGA
65 AAAGTCCTCCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTGTGGCTAAAAATTGA
* * * * *
759 GG-AAATTTTTTTGGGTCATTTTTTGCAAAATTTTTGCCGAAATCATATACTAACCATCATATTT
130 GGAAAAATATTTTGGGTCAATTTTTGCAAAA-TTTTGCCGAAATC--GT-GT----AT-ATATTT
* * * * * *
823 TTTGGCTGAAAACGCATTTCGCAGCCCCGACTTAGTTTTATATGAATTTTGGCGCCGAGACTCCT
186 TTTGGCTAAAAACGCAGTTCGCAGCCCCGACTTAGTTTTACATGAATTTTGGCGCCAAAACTCAT
** *
888 TAAAATATCTATATTTTTCTAATAAAATCTCAGCCACATTGAATCT-AAGGATTTGTTTTTACGA
251 TAAAATATCTATATTCATCTAATAAAATCTCAGCCACATTGAAT-TAAAAGATTT-TTTTTACGA
952 GCATCTT-
314 GCAT-TTG
959 AATCTTGTTTCGATTTAATTAGAAAATTAATTCAAAAAATATGAAAAACGATATTAAAAGCGTGA
1 AATCTTGTTTCGATTTAATTAG-AAATTAATTCAAAAAATATGAAAAACGATATTAAAAGCGTGA
* * *
1024 AAAGTCCTCCAATATTTTTGGCGTTGAATTATATATATTTTATGAGTATTGTGGATAAAAATTTA
65 AAAGTCCTCCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTGTGGCTAAAAATTGA
* *
1089 GGAAAAATATTTTGGGTCAATTTTTGCAAAATTTTACCGAAATCGTGT-T-T-TTTTTT-GTTAA
130 GGAAAAATATTTTGGGTCAATTTTTGCAAAATTTTGCCGAAATCGTGTATATATTTTTTGGCTAA
* * * * * ** * *
1150 AAACGC-GTTCGGAGCCCTCG-GTTAGTTTTGCAT-TATTTGTGGTGGTAAAACTCATTGAATTA
195 AAACGCAGTTCGCAGCCC-CGACTTAGTTTTACATGAATTT-TGGCGCCAAAACTCATTAAAATA
* *
1212 TCTATATTCATCTAAGT-AAATCTTAGCCACATTGGATTAAAAGATTTTTTTTACGAGCATTTG
258 TCTATATTCATCTAA-TAAAATCTCAGCCACATTGAATTAAAAGATTTTTTTTACGAGCATTTG
* * * * * *
1275 AATCATATTTCGATTTAATTAGAAATTAATTTGAAAAAAAAGGAAAAACGATATTGGAAA-CGTG
1 AATCTTGTTTCGATTTAATTAGAAATTAA-TTCAAAAAATATGAAAAACGATATT-AAAAGCGTG
* * * * * *
1339 AGAAGTCCTTCAATCTTTTTTGCGTTGAAATATTATATATTTTTATGAGTATTGAGGCTAAAAGT
64 AAAAGTCCTCCAATCTTTTTGGCGTTGAATTA-TATATA-TTTTATGAGTATTGTGGCTAAAAAT
** *
1404 TGA-GAAATGTATTTCGGGTCAATTTTTGCAAAATTTTGCCGAAATCGTGTA
127 TGAGGAAAAATATTTTGGGTCAATTTTTGCAAAATTTTGCCGAAATCGTGTA
1455 CCATCAGGAT
Statistics
Matches: 426, Mismatches: 57, Indels: 37
0.82 0.11 0.07
Matches are distributed among these distances:
315 9 0.02
316 91 0.21
317 124 0.29
318 36 0.08
319 6 0.01
320 1 0.00
322 1 0.00
327 1 0.00
328 1 0.00
329 30 0.07
330 101 0.24
331 25 0.06
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (320 bp):
AATCTTGTTTCGATTTAATTAGAAATTAATTCAAAAAATATGAAAAACGATATTAAAAGCGTGAA
AAGTCCTCCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTGTGGCTAAAAATTGAG
GAAAAATATTTTGGGTCAATTTTTGCAAAATTTTGCCGAAATCGTGTATATATTTTTTGGCTAAA
AACGCAGTTCGCAGCCCCGACTTAGTTTTACATGAATTTTGGCGCCAAAACTCATTAAAATATCT
ATATTCATCTAATAAAATCTCAGCCACATTGAATTAAAAGATTTTTTTTACGAGCATTTG
Found at i:7386 original size:325 final size:324
Alignment explanation
Indices: 6470--8525 Score: 1798
Period size: 325 Copynumber: 6.3 Consensus size: 324
6460 GATTTCGGCT
* * *
6470 AAAAACAGATCCGAAAAGTTTTTTCC-AAATTTTTTGCCACAATATTCA-AAAAAATATATAATT
1 AAAAACTGACCCGAAAA-TTTTTTCCTCAA-TTTTTGCCACAATATTCAGAAAAAATATATAATT
* * * * *
6533 TAATACCAAAAAGAA-TGACGGGCTCTTCACGCTTCTAATATC-TTTTTTCCATTTTTCCCGAAT
64 CAACACCAAAAA-AATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTTCAATTTTT-CCGAAT
* * * *
6596 TAATTT-TAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAATAAATCCTTAAATCCAATGTA
127 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTG
* * * *
6660 GCTGGGATTTGGTTAGATGAATATAGATATTTC-AAGAATTCTTTATGCCAAAAATCATGCAAAG
192 GCTGAGATTTGGTTCGATGAATATAGATATTTCAAAG-AGTCTTTATGCCAAAAATCATGCAAAA
* * * * *
6724 CTGAGCCGGGGCCCGAAATGCGTTTTTAGCCATAAACTGTGATGGTTAGCACATGATTTCGGCTA
256 CTGAGTCGGGGCCCGGAACGCGTTTTTAGCCA-AAACCGTGATGG-TA-CAC--GAATTCGGCTA
6789 AAATTTTGC
316 AAATTTTGC
* * * * * *
6798 AAAAACTGATCC-AAATTTTTGTTTTCTCAATTCCTTGCCACAATACTCATAAAAAATATATAAT
1 AAAAACTGACCCGAAA-ATTT-TTTCCTCAATT-TTTGCCACAATATTCAGAAAAAATATATAAT
* * *
6862 TCAACACCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTTC-ATTTTTCCAAATT
63 TCAACACCAAAAAAATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTTCAATTTTTCCGAATT
* * ** * * * *
6926 AATTTTTAATTAGATTAAAACAACATTCGGATGCTTGTAAAAACAAATCCTTA-AACCGAATGTG
128 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCC-AATGTG
* * ** * * * * *
6990 TCTGAAATTTAATACGATGAATATAGATATTT-AAAGGAGTTTTTATGCCAACAATAATGTAAAA
192 GCTGAGATTTGGTTCGATGAATATAGATATTTCAAA-GAGTCTTTATGCCAAAAATCATGCAAAA
* *
7054 CTGAGTCGGGGCCTGGAATGCG-TTTTAGCCAAAACCGTGATGGTACACGAATTCGGCTAAAATT
256 CTGAGTCGGGGCCCGGAACGCGTTTTTAGCCAAAACCGTGATGGTACACGAATTCGGCTAAAATT
7118 TTGC
321 TTGC
* *
7122 AAAAAAACTTGA-CCGAAAAATTTTTCCTCAATTCTTTGCCACAATATTTAGAAAAAA-ATATAA
1 --AAAAAC-TGACCCGAAAATTTTTTCCTCAATT-TTTGCCACAATATTCAGAAAAAATATATAA
* * ** * *
7185 TTCAGCGCCAAAAAAATTGAAGGATTTTTCACGCTTCTAATATTGTTTTTTCAATTTTTTCGAAT
62 TTCAACACCAAAAAAATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTTCAATTTTTCCGAAT
* **
7250 TAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTATATCCAATAAG
127 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTG
* ** * *
7315 GCTGAGATTTGGTTCAATGAATATAGATATTTCAAAGAGTCTTTGCGCCAAAAAACATGCAAAAT
192 GCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTATGCCAAAAATCATGCAAAAC
* * * *
7380 TGAGTCGGGGCTCCGGAACACCTTTTTAGCCAAAACCCGTGATTGTTACTTAGTACTCAATTTCG
257 TGAGTCGGGGC-CCGGAACGCGTTTTTAGCCAAAA-CCGTGA-TGGTAC-----AC-GAA-TTCG
*
7445 ACTAAAATTTTGC
312 GCTAAAATTTTGC
* * * * *
7458 AAAAACTTACCCCAAAAGTTATTCCTCAATTTTTCGCCACAATACTT-TGAAAAAATATATAATT
1 AAAAACTGACCCGAAAATTTTTTCCTCAATTTTT-GCCACAATA-TTCAGAAAAAATATATAATT
** * *** * *
7522 CAATGCCAAAAATATTGACCAGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTTTCCGAATT
64 CAACACCAAAAAAATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTTCA-ATTTTTCCGAATT
* * * *
7587 AATTCCTAATTAAATCGAAACAAAATTGAGATGCTCGTCAAAACAAATCCTTATATCCAATGTGG
128 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGG
* *
7652 CTGAGATTTGGTTCGATGAATATAGATATTTCAAGGA-TCATTTATGCCAAAACTCATGCAAAAC
193 CTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTC-TTTATGCCAAAAATCATGCAAAAC
* * ** * * * **
7716 TGAGTAGAGGTCCCAAAACGCGTTTTTAGCTAAAATCCGTGATTGT---C-AA-T--AC-ACGAT
257 TGAGTCG-GGGCCCGGAACGCGTTTTTAGCCAAAA-CCGTGATGGTACACGAATTCGGCTAAAAT
*
7773 TTCGGC
320 TT-TGC
* * ** * * * *
7779 -TAAACTTACCCGAATTTTTTTTTCTCAATTTTTTGCCATAATACTCAG-AAAAATATGTAATAT
1 AAAAACTGACCCGAAAATTTTTTCCTCAA-TTTTTGCCACAATATTCAGAAAAAATATATAAT-T
* * * * * * * * *
7842 -AACACCTAAAAGATTGGAGTGTTTTTTACGCTTCTAAAATTGTTTTTTC-ATTTTTCCAAATTA
64 CAACACCAAAAAAATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTTCAATTTTTCCGAATTA
* * *
7905 ATTTCTAATTAAATCGAAATAAGATTCAGTTGCTCGT-AAAACAAATCCTTATATCCAATGCGGC
129 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGC
** * * *
7969 TGAGATTTTCTTCGATAAATATAGATATTGC-AAGAAGTCTTTACGCCAAAAATCATGCAAAACT
194 TGAGATTTGGTTCGATGAATATAGATATTTCAAAG-AGTCTTTATGCCAAAAATCATGCAAAACT
* * * * * **
8033 GAGTCGGGGCCCCGGAACACGTTTTTAG-AATTATAACTGTGATGGT-TA-GTACACGG-T----
258 GAGTCGGGG-CCCGGAACGCGTTTTTAGCCA--A-AACCGTGATGGTACACGAATTCGGCTAAAA
**
8090 TTCGGC
319 TTTTGC
* * * * * * * *
8096 TATAAACTGATCCGAAAATCTTTTT-CTGAAATTTTGCAATATTACTCAGAAAAAAAATATATAA
1 -AAAAACTGACCCGAAAAT-TTTTTCCTCAATTTTTGCCACAATATTCAG--AAAAAATATATAA
* *** * * * *
8160 TTCAACACCAGAGTGATTGACGGGCTTTTCACGTTTCTAATATCGTTTTTCCATTTTTTTCCGAA
62 TTCAACACCAAAAAAATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTTCA-ATTTTTCCGAA
* *
8225 TTAATTTCTAATTGAATCGAAATAAGATTCAGATGCTCGTAAAAAACAAATCCTTATATCCAATG
126 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT-AAAAACAAATCCTTATATCCAATG
* * *
8290 TGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAAAAGTCTTTGTGCCAAAAATCATGCAAA
190 TGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTATGCCAAAAATCATGCAAA
* * * *
8355 ATTGAGCCGGGGCTCCGGAACGCGTTTTTTAGCCAAAAACTGTGATGGTTATAGTACACGATTTC
255 ACTGAGTCGGGGC-CCGGAACGCG-TTTTTAGCC-AAAACCGTGAT-G-----GTACACGAATTC
*
8420 GGCTAAAATTTTGA
311 GGCTAAAATTTTGC
* * * * * *
8434 AAAAACTGACCCGAAAAGTTTTTCCTCGATTTTT-CCATCAATACTCTGAAAAGATATATAACTC
1 AAAAACTGACCCGAAAATTTTTTCCTCAATTTTTGCCA-CAATATTCAGAAAAAATATATAATTC
* *
8498 AACGCCAAAAAAATTGAAAGG-TTTTCAC
65 AACACCAAAAAAATTGAAGGGCTTTTCAC
8526 ACATCCCATA
Statistics
Matches: 1400, Mismatches: 244, Indels: 162
0.78 0.14 0.09
Matches are distributed among these distances:
315 5 0.00
316 97 0.07
317 58 0.04
318 20 0.01
319 69 0.05
320 42 0.03
321 57 0.04
323 48 0.03
324 71 0.05
325 254 0.18
326 36 0.03
327 27 0.02
328 35 0.03
329 45 0.03
330 168 0.12
331 10 0.01
332 1 0.00
333 9 0.01
334 50 0.04
335 87 0.06
336 176 0.13
337 32 0.02
338 3 0.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (324 bp):
AAAAACTGACCCGAAAATTTTTTCCTCAATTTTTGCCACAATATTCAGAAAAAATATATAATTCA
ACACCAAAAAAATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTTCAATTTTTCCGAATTAAT
TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTG
AGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTATGCCAAAAATCATGCAAAACTGAG
TCGGGGCCCGGAACGCGTTTTTAGCCAAAACCGTGATGGTACACGAATTCGGCTAAAATTTTGC
Found at i:8335 original size:977 final size:976
Alignment explanation
Indices: 6266--8514 Score: 2309
Period size: 977 Copynumber: 2.3 Consensus size: 976
6256 TTTGTTTCAT
* * * *
6266 ATTTTTT-GAATTAATTTCTAATTAAATCGAAACAAGATTTAAGTACTCGTAAAACCAAATCCTT
1 ATTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTT
* * * * * ** ** * *
6330 AAATCCAATATGTCTCAGATTTGATT-AGATGAATA-ACGATATTTTGAGGAGTCTTGGCACCAA
66 ATATCCAATAAGGCTGAGATTTGGTTCA-ATGAATATA-GATATTTCAAAAAGTCTTTGCGCCAA
* * * ** * * * * * *
6393 AAACCATGTAAAATAGAGTTGTGGCCCCGGGAGAC-ATTTTTAGCCAAAAACCGCGATGG---TA
129 AAAACATGCAAAATTGAGCCGGGGCTCCGGAACACGCTTTTTAGCCAAAAACCGTGATGGTTATA
** * * * * * *
6454 GTACATGATTTCGGC--------T--AAAAACAGATCCGAAAAGTTTTTTCC-AAATTTTTTGCC
194 GTACACAATTTCGACTAAAATTTTGAAAAAACTGACCCCAAAAG-TTATTCCTCAA-TTTTTGCC
** * * **
6508 ACAATA-TTCAAAAAAATATATAATTTAATACCAAAAAGAA-TGACGGGCTCTTCACGCTTCTAA
257 ACAATACTTTGAAAAAATATATAATTCAATGCCAAAAA-AATTGACCAGCTCTTCACGCTTCTAA
* *
6571 TATCTTTTTTCCATTTTTCCCGAATTAATTTTAATTAAATCGAAACAAGATTAAGATGCTCGTAA
321 TATCTTTTTTCCATTTTTCCCGAATTAATTCTAATTAAATCGAAACAAAATTAAGATGCTCGTAA
* *
6636 AAATAAATCCTTAAATCCAATGTAGCTGGGATTTGGTTAGATGAATATAGATATTTCAAGAATTC
386 AAACAAATCCTTAAATCCAATGTAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAATTC
* * * * *
6701 TTTATGCCAAAAATCATGCAAAGCTGAGCCGGGGCCCGAAATGCGTTTTTAGCCATAAACTGTGA
451 TTTATGCCAAAAATCATGCAAAACTGAGCAGGGGCCCAAAACGCGTTTTTAGCCATAAACCGTGA
* * * *
6766 TGGTTAGCACATGATTTCGGCTAAAATTTTGCAAAAACTGATCCAAATTTTTGTTTTCTCAATTC
516 TGGTCAACACACGATTTCGGCTAAAATCTT-----AAC---TCCAAATTTTTGTTTTCTCAATTC
6831 CTTGCCACAATACTCATAAAAAATATATAATTCAACACCAAAAAGATTGACGGGCTTTTCACGCT
573 CTTGCCACAATACTCATAAAAAATATATAATTCAACACCAAAAAGATTGACGGGCTTTTCACGCT
* * * * *
6896 TCTAATATCGTTTTTTCATTTTTCCAAATTAATTTTTAATTAGATTAAAACAACATTCGGATGCT
638 TCTAAAATCGTTTTTTCATTTTTCCAAATTAATTTCTAATTAAATCAAAACAACATTCAGATGCT
* * * * *
6961 TGTAAAAACAAATCCTTAAACCGAATGTGTCTGAAATTTAATACGATGAATATAGATATTTAAAG
703 CGTAAAAACAAATCCTTAAACCGAATGCGGCTGAAATTTAATACGATAAATATAGATATTGAAAG
* * * * * * ** *
7026 GAGTTTTTATGCCAACAATAATGTAAAACTGAGTCGGGGCCTGGAATGCGTTTTAGCCAAAACCG
768 AAGTCTTTACGCCAAAAATAATGCAAAACTGAGTCGGGGCCCGGAACACGTTTTAGCAAAAACCG
** ** *
7091 TGATGGTACACGAATTCGGCTAAAATTTTGCAAAAAAACTTGACCGAAAAATTTTTCCTCAATTC
833 TGATGGTACACGAACACGGCT---ATTCGGCAAAAAAACTTGACCGAAAAATTTTTCCTCAAATC
* * * * * *
7156 TTTGCCACAATATTTAGAAAAAAATATAATTCAGCGCCAAAAAAATTGAAGGATTTTTCACGCTT
895 TTTGCAACAATACTCAGAAAAAAATATAATTCAACACCAAAAAAATTGAAGGACTTTTCACGCTT
* *
7221 CTAATATTGTTTTTTCA
960 CTAATATCGTTTTTCCA
7238 ATTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTT
1 ATTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTT
*
7303 ATATCCAATAAGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAGAGTCTTTGCGCCAAAA
66 ATATCCAATAAGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAAAGTCTTTGCGCCAAAA
* * *
7368 AACATGCAAAATTGAGTCGGGGCTCCGGAACAC-CTTTTTAGCCAAAACCCGTGATTGTTACTTA
131 AACATGCAAAATTGAGCCGGGGCTCCGGAACACGCTTTTTAGCCAAAAACCGTGATGGTTA--TA
* * *
7432 GTACTCAATTTCGACTAAAATTTTGCAAAAACTTACCCCAAAAGTTATTCCTCAATTTTTCGCCA
194 GTACACAATTTCGACTAAAATTTTGAAAAAACTGACCCCAAAAGTTATTCCTCAATTTTT-GCCA
* * *
7497 CAATACTTTGAAAAAATATATAATTCAATGCCAAAAATATTGACCAGTTTTTCACGCTTCTAATA
258 CAATACTTTGAAAAAATATATAATTCAATGCCAAAAAAATTGACCAGCTCTTCACGCTTCTAATA
* * *
7562 TCGTTTTTT-CATTTTTTTCCGAATTAATTCCTAATTAAATCGAAACAAAATTGAGATGCTCGTC
323 TC-TTTTTTCCA-TTTTTCCCGAATTAATT-CTAATTAAATCGAAACAAAATTAAGATGCTCGTA
* * * *
7626 AAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGA-T
385 AAAACAAATCCTTAAATCCAATGTAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAATT
* * * *
7690 CATTTATGCCAAAACTCATGCAAAACTGAGTAGAGGTCCCAAAACGCGTTTTTAGCTA-AAATCC
450 C-TTTATGCCAAAAATCATGCAAAACTGAGCAG-GGGCCCAAAACGCGTTTTTAGCCATAAA-CC
* * * **
7754 GTGATTGTCAATACACGATTTCGGCT-AAA-CTT-AC-CCGAATTTTT-TTTTCTCAATTTTTTG
512 GTGATGGTCAACACACGATTTCGGCTAAAATCTTAACTCCAAATTTTTGTTTTCTCAATTCCTTG
* * * * * * *
7814 CCATAATACTCA-GAAAAATATGTAATAT-AACACCTAAAAGATTGGA-GTGTTTTTTACGCTTC
577 CCACAATACTCATAAAAAATATATAAT-TCAACACCAAAAAGATT-GACGGGCTTTTCACGCTTC
* * * * *
7876 TAAAATTGTTTTTTCATTTTTCCAAATTAATTTCTAATTAAATCGAAATAAGATTCAGTTGCTCG
640 TAAAATCGTTTTTTCATTTTTCCAAATTAATTTCTAATTAAATCAAAACAACATTCAGATGCTCG
* * ** * *
7941 T-AAAACAAATCCTTATATCC-AATGCGGCTGAGATTTTCTTCGATAAATATAGATATTGCAAGA
705 TAAAAACAAATCCTTA-AACCGAATGCGGCTGAAATTTAATACGATAAATATAGATATTGAAAGA
*
8004 AGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACACGTTTTTAG-AATTATA
769 AGTCTTTACGCCAAAAATAATGCAAAACTGAGTCGGGG-CCCGGAACACG-TTTTAGCAA--A-A
* * * * * * *
8068 ACTGTGATGGT-TA-GTACACGG-T-TTCGGC-TATAAAC-TGATCCG-AAAATCTTTTTCTGAA
829 ACCGTGATGGTACACGAACACGGCTATTCGGCAAAAAAACTTGA-CCGAAAAAT-TTTTCCTCAA
* * * *** * *
8126 AT-TTTGCAATATTACTCAGAAAAAAAATATATAATTCAACACCAGAGTGATTGACGGGCTTTTC
892 ATCTTTGCAACAATACTCAG--AAAAAA-ATATAATTCAACACCAAAAAAATTGAAGGACTTTTC
*
8190 ACGTTTCTAATATCGTTTTTCCA
954 ACGCTTCTAATATCGTTTTTCCA
* * * *
8213 TTTTTTTCCGAATTAATTTCTAATTGAATCGAAATAAGATTCAGATGCTCGTAAAAAACAAATCC
1 ATTTTTT-CGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGT-AAAAACAAATCC
** ** *
8278 TTATATCCAATGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAAAAGTCTTTGTGCCAA
64 TTATATCCAATAAGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAAAGTCTTTGCGCCAA
* * * *
8343 AAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTTAGCCAAAAACTGTGATGGTTATA
129 AAAACATGCAAAATTGAGCCGGGGCTCCGGAACACGCTTTTTAGCCAAAAACCGTGATGGTTATA
* * * * *
8408 GTACACGATTTCGGCTAAAATTTTGAAAAAACTGACCCGAAAAGTTTTTCCTCGATTTTT-CCAT
194 GTACACAATTTCGACTAAAATTTTGAAAAAACTGACCCCAAAAGTTATTCCTCAATTTTTGCCA-
* * * *
8472 CAATACTCTGAAAAGATATATAACTCAACGCCAAAAAAATTGA
258 CAATACTTTGAAAAAATATATAATTCAATGCCAAAAAAATTGA
8515 AAGGTTTTCA
Statistics
Matches: 1061, Mismatches: 171, Indels: 87
0.80 0.13 0.07
Matches are distributed among these distances:
972 27 0.03
973 166 0.16
974 15 0.01
975 91 0.09
976 95 0.09
977 183 0.17
978 143 0.13
979 39 0.04
980 11 0.01
981 11 0.01
984 2 0.00
986 1 0.00
987 11 0.01
988 26 0.02
989 52 0.05
990 26 0.02
991 120 0.11
992 42 0.04
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (976 bp):
ATTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTT
ATATCCAATAAGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAAAGTCTTTGCGCCAAAA
AACATGCAAAATTGAGCCGGGGCTCCGGAACACGCTTTTTAGCCAAAAACCGTGATGGTTATAGT
ACACAATTTCGACTAAAATTTTGAAAAAACTGACCCCAAAAGTTATTCCTCAATTTTTGCCACAA
TACTTTGAAAAAATATATAATTCAATGCCAAAAAAATTGACCAGCTCTTCACGCTTCTAATATCT
TTTTTCCATTTTTCCCGAATTAATTCTAATTAAATCGAAACAAAATTAAGATGCTCGTAAAAACA
AATCCTTAAATCCAATGTAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAATTCTTTAT
GCCAAAAATCATGCAAAACTGAGCAGGGGCCCAAAACGCGTTTTTAGCCATAAACCGTGATGGTC
AACACACGATTTCGGCTAAAATCTTAACTCCAAATTTTTGTTTTCTCAATTCCTTGCCACAATAC
TCATAAAAAATATATAATTCAACACCAAAAAGATTGACGGGCTTTTCACGCTTCTAAAATCGTTT
TTTCATTTTTCCAAATTAATTTCTAATTAAATCAAAACAACATTCAGATGCTCGTAAAAACAAAT
CCTTAAACCGAATGCGGCTGAAATTTAATACGATAAATATAGATATTGAAAGAAGTCTTTACGCC
AAAAATAATGCAAAACTGAGTCGGGGCCCGGAACACGTTTTAGCAAAAACCGTGATGGTACACGA
ACACGGCTATTCGGCAAAAAAACTTGACCGAAAAATTTTTCCTCAAATCTTTGCAACAATACTCA
GAAAAAAATATAATTCAACACCAAAAAAATTGAAGGACTTTTCACGCTTCTAATATCGTTTTTCC
A
Done.