Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004774.1 Corchorus capsularis cultivar CVL-1 contig04792, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4147
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32


Found at i:953 original size:15 final size:15

Alignment explanation


    Indices: 933--963  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        923 CCCACAGAGA

                           
        933 ACAATTAAAAGATAG
          1 ACAATTAAAAGATAG

                           
        948 ACAATTAAAAGATAG
          1 ACAATTAAAAGATAG

             
        963 A
          1 A

        964 AAGATCTTTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.61, C:0.06, G:0.13, T:0.19


Consensus pattern (15 bp):   
ACAATTAAAAGATAG

Found at i:1068 original size:6 final size:6

Alignment explanation


    Indices: 1057--1083  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       1047 AAAGCAAAGC

                                           
       1057 AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAA

       1084 ACAGATTAAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30


Consensus pattern (6 bp):   
AAATCT

Found at i:1104 original size:13 final size:13

Alignment explanation


    Indices: 1088--1114  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1078 TCTAAAACAG

                         
       1088 ATTAATAAAGCAA
          1 ATTAATAAAGCAA

                         
       1101 ATTAATAAAGCAA
          1 ATTAATAAAGCAA

             
       1114 A
          1 A

       1115 CAATAATTAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22


Consensus pattern (13 bp):   
ATTAATAAAGCAA
Done.