Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004776.1 Corchorus capsularis cultivar CVL-1 contig04794, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7245
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:1709 original size:2 final size:2

Alignment explanation


    Indices: 1702--1742  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       1692 CAATCTCATG

                                                                         
       1702 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1743 CACACACACT


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:2140 original size:14 final size:14

Alignment explanation


    Indices: 2121--2148  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       2111 CCTCTAACAA

                          
       2121 GGTTTAAAGCCATG
          1 GGTTTAAAGCCATG

                          
       2135 GGTTTAAAGCCATG
          1 GGTTTAAAGCCATG

       2149 ATGTGCGCGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29


Consensus pattern (14 bp):   
GGTTTAAAGCCATG
Done.