Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004777.1 Corchorus capsularis cultivar CVL-1 contig04795, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2427
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27


Found at i:1019 original size:18 final size:18

Alignment explanation


    Indices: 996--1038  Score: 59
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        986 ATCTTTAAAT

                    *    * *  
        996 ATATATATTAAATCTGTA
          1 ATATATATAAAATATATA

                              
       1014 ATATATATAAAATATATA
          1 ATATATATAAAATATATA

                   
       1032 ATATATA
          1 ATATATA

       1039 AATATTATTT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42


Consensus pattern (18 bp):   
ATATATATAAAATATATA

Found at i:2145 original size:26 final size:27

Alignment explanation


    Indices: 2097--2150  Score: 83
    Period size: 26  Copynumber: 2.0  Consensus size: 27

       2087 CAACCCGAAA

                           *           
       2097 CCGAAACTGACCCAATCCAAAAATGAC
          1 CCGAAACTGACCCAAACCAAAAATGAC

                              *        
       2124 CCGAAA-TGACCCAAACCTAAAATGAC
          1 CCGAAACTGACCCAAACCAAAAATGAC

             
       2150 C
          1 C

       2151 AAGATCCGAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  26   19  0.76
  27    6  0.24

ACGTcount: A:0.44, C:0.33, G:0.11, T:0.11


Consensus pattern (27 bp):   
CCGAAACTGACCCAAACCAAAAATGAC
Done.