Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000478.1 Corchorus capsularis cultivar CVL-1 contig00478, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2300
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33


Found at i:1780 original size:25 final size:24

Alignment explanation


    Indices: 1750--1807  Score: 71
    Period size: 25  Copynumber: 2.3  Consensus size: 24

       1740 ATTATTGTTC

                        *            
       1750 TTTCTTAAAATATACCAAAGACTTT
          1 TTTCTTAAAA-AGACCAAAGACTTT

                   **                
       1775 TTTCTTTTGAAAGACCAAAGACTTT
          1 TTTC-TTAAAAAGACCAAAGACTTT

                    
       1800 TTTCTTAA
          1 TTTCTTAA

       1808 TTAATGAATA


Statistics
Matches: 27,  Mismatches: 5, Indels: 3
        0.77            0.14        0.09

Matches are distributed among these distances:
  24    2  0.07
  25   21  0.78
  26    4  0.15

ACGTcount: A:0.34, C:0.16, G:0.07, T:0.43


Consensus pattern (24 bp):   
TTTCTTAAAAAGACCAAAGACTTT
Done.