Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004797.1 Corchorus capsularis cultivar CVL-1 contig04815, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1017
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30


Found at i:418 original size:22 final size:22

Alignment explanation


    Indices: 393--436  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        383 TTTTCCCACA

                   *  *           
        393 ACAAATTTTGTCCCGAAGTTGT
          1 ACAAATTCTGGCCCGAAGTTGT

                *      *          
        415 ACAAGTTCTGGGCCGAAGTTGT
          1 ACAAATTCTGGCCCGAAGTTGT

        437 CCTGAAATTC


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32


Consensus pattern (22 bp):   
ACAAATTCTGGCCCGAAGTTGT

Found at i:498 original size:22 final size:22

Alignment explanation


    Indices: 466--533  Score: 91
    Period size: 22  Copynumber: 3.1  Consensus size: 22

        456 TTTCAACAGG

                  *      *        
        466 CCAAGTCCTGGGCTGAAGTTGT
          1 CCAAGTTCTGGGCAGAAGTTGT

             *          *         
        488 CTAAGTTCTGGGAAGAAGTTGT
          1 CCAAGTTCTGGGCAGAAGTTGT

                             *    
        510 CCAAGTTCTGGGCAGAACTTGT
          1 CCAAGTTCTGGGCAGAAGTTGT

              
        532 CC
          1 CC

        534 TGAATTTTAG


Statistics
Matches: 39,  Mismatches: 7, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   39  1.00

ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28


Consensus pattern (22 bp):   
CCAAGTTCTGGGCAGAAGTTGT
Done.