Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004815.1 Corchorus capsularis cultivar CVL-1 contig04833, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16967

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
961--1173
32
6.7
32
82
4
223
29
21
16
32
1.96
965--1173
96
2.2
96
83
3
260
28
21
17
32
1.96
3269--3406
67
2.1
67
97
0
258
26
28
23
22
1.99
3637--3734
33
3.0
33
78
0
106
13
29
17
39
1.87
3679--3755
33
2.3
32
80
4
82
15
29
14
40
1.87
4695--4729
16
2.2
16
100
0
70
42
11
0
45
1.40
4712--5637
438
2.1
438
85
3
1222
27
13
16
41
1.87
9514--10490
445
2.2
441
79
5
1016
42
15
13
28
1.85
11907--11957
26
2.0
26
100
0
102
52
3
3
39
1.38
12449--13153
353
2.0
351
83
3
898
32
17
19
31
1.94
13360--13421
24
2.5
24
80
12
72
48
1
6
43
1.38

Tables:   1

The End!