Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004822.1 Corchorus capsularis cultivar CVL-1 contig04840, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1025
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:436 original size:19 final size:19

Alignment explanation


    Indices: 406--452  Score: 87
    Period size: 19  Copynumber: 2.5  Consensus size: 19

        396 TTCATTGTCT

                               
        406 TATTCC-TTATGGAACACA
          1 TATTCCATTATGGAACACA

                               
        424 TATTCCATTATGGAACACA
          1 TATTCCATTATGGAACACA

                      
        443 TATTCCATTA
          1 TATTCCATTA

        453 AAGGATTTTC


Statistics
Matches: 28,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  18    6  0.21
  19   22  0.79

ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36


Consensus pattern (19 bp):   
TATTCCATTATGGAACACA
Done.