Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004837.1 Corchorus capsularis cultivar CVL-1 contig04855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12144

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
702--726
2
12.5
2
100
0
50
48
0
0
52
1.00
1077--1142
31
2.2
30
88
2
96
36
27
13
22
1.92
1882--1993
34
3.3
34
73
14
106
13
39
33
14
1.85
3964--3988
12
2.1
12
100
0
50
24
28
8
40
1.83
4086--4142
28
2.0
29
93
3
98
35
7
12
45
1.69
6515--6613
47
2.1
47
96
0
180
44
4
15
36
1.65
7319--7374
21
2.8
21
79
15
64
55
5
19
19
1.62
7489--7540
25
2.0
26
89
10
81
44
11
17
26
1.83
7626--7656
16
1.9
16
100
0
62
51
6
22
19
1.69
7781--7848
26
2.6
25
81
6
64
50
4
19
26
1.66
7843--7888
14
3.4
14
78
3
58
58
4
19
17
1.55
7919--7970
21
2.5
21
81
12
63
51
5
17
25
1.67
7931--7998
21
3.2
21
83
8
77
52
4
22
20
1.63
7981--8027
21
2.2
22
78
17
55
46
4
25
23
1.70
8060--8130
28
2.6
29
82
12
80
56
1
26
15
1.48
11235--11269
12
2.9
12
86
0
52
17
17
8
57
1.64
11326--11359
17
2.0
17
88
0
50
20
26
0
52
1.46

Tables:   1

The End!