Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004844.1 Corchorus capsularis cultivar CVL-1 contig04862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12423

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1520--1551
15
2.1
16
94
5
57
43
18
25
12
1.85
3849--3959
57
1.9
57
96
0
204
44
7
23
25
1.79
5294--5399
8
13.6
8
80
4
65
38
2
12
46
1.56
5294--5333
4
10.0
4
94
0
71
27
0
22
50
1.50
5331--5399
2
35.0
2
79
2
68
44
4
5
44
1.47
5453--5505
22
2.5
22
81
9
65
41
9
5
43
1.61
5505--6053
22
25.3
22
69
14
184
34
15
10
39
1.82
5714--5765
21
2.4
22
72
15
54
40
17
7
34
1.78
6364--6525
22
7.4
21
75
11
91
38
16
7
37
1.77
6565--6760
44
4.4
43
76
7
133
37
16
10
34
1.84
6557--6718
68
2.4
67
82
8
188
38
17
10
33
1.84
6403--6671
146
1.9
144
82
7
339
37
16
8
37
1.80
6557--6738
66
2.7
66
80
8
165
39
18
9
32
1.83
6548--6762
22
9.7
22
71
10
107
38
17
10
33
1.84
6927--6963
19
1.9
19
89
10
58
64
0
5
29
1.15
7215--7270
30
2.0
27
82
10
67
46
1
3
48
1.30
7869--7929
26
2.3
26
81
16
63
45
0
8
45
1.33
9378--9452
37
2.1
35
82
5
87
61
10
14
13
1.57
9561--9619
29
2.0
29
86
0
82
49
1
18
30
1.58
10833--10881
2
24.5
2
91
0
80
51
2
0
46
1.12

Tables:   1

The End!