Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004860.1 Corchorus capsularis cultivar CVL-1 contig04878, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13193

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4633--4713
28
2.7
31
81
12
107
32
25
24
17
1.97
5539--5669
65
2.0
65
97
2
246
32
30
7
29
1.85
9764--9831
35
2.0
34
94
5
120
29
14
14
41
1.86
10530--10555
13
2.0
13
100
0
52
84
0
15
0
0.62
12652--12720
22
3.1
22
85
4
86
40
13
11
34
1.80
12709--12788
23
3.5
23
82
1
99
38
12
6
42
1.68
12687--12788
45
2.3
46
84
3
127
38
12
8
40
1.75
12732--12850
60
2.0
61
88
1
177
34
12
7
45
1.71
12663--12957
22
13.6
22
68
11
153
35
12
9
42
1.75
12945--12995
19
2.6
20
90
6
86
25
17
11
45
1.83
13103--13154
22
2.4
22
93
3
88
38
9
7
44
1.66

Tables:   1

The End!