Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004867.1 Corchorus capsularis cultivar CVL-1 contig04885, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8096
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:6616 original size:22 final size:22

Alignment explanation


    Indices: 6591--6632  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       6581 ACTAAAGACT

                  *               
       6591 GTGGCCGTGAGATTCGGCCATA
          1 GTGGCCATGAGATTCGGCCATA

                *               
       6613 GTGGTCATGAGATTCGGCCA
          1 GTGGCCATGAGATTCGGCCA

       6633 CATGATGGTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24


Consensus pattern (22 bp):   
GTGGCCATGAGATTCGGCCATA
Done.