Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004869.1 Corchorus capsularis cultivar CVL-1 contig04887, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6336
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32


Found at i:5063 original size:16 final size:17

Alignment explanation


    Indices: 5042--5075  Score: 61
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       5032 TCTACGTGGC

                             
       5042 ATTTTTAAA-ATTTTTT
          1 ATTTTTAAATATTTTTT

                             
       5058 ATTTTTAAATATTTTTT
          1 ATTTTTAAATATTTTTT

             
       5075 A
          1 A

       5076 AATATTTGTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    9  0.53
  17    8  0.47

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (17 bp):   
ATTTTTAAATATTTTTT

Found at i:5097 original size:10 final size:11

Alignment explanation


    Indices: 5059--5096  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

       5049 AAATTTTTTA

                       
       5059 TTTTTAAATAT
          1 TTTTTAAATAT

                       
       5070 TTTTTAAATAT
          1 TTTTTAAATAT

                  *     
       5081 TTGTTTTAAT-T
          1 TT-TTTAAATAT

                 
       5092 TTTTT
          1 TTTTT

       5097 TTACTTTTAT


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  10    3  0.12
  11   16  0.64
  12    6  0.24

ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71


Consensus pattern (11 bp):   
TTTTTAAATAT
Done.