Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000487.1 Corchorus capsularis cultivar CVL-1 contig00487, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2046
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34


Found at i:1665 original size:42 final size:43

Alignment explanation


    Indices: 1581--1666  Score: 138
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       1571 ATTCTTGTTG

                                         *    *  *     
       1581 ATCTCCATGAGCAATTAAATACAAAACTATCAAAGCAGCACAA
          1 ATCTCCATGAGCAATTAAATACAAAACTAACAAAACAACACAA

                                                       
       1624 ATCTCCATGAGCAATTAAATAC-AAACTAACAAAACAACACAA
          1 ATCTCCATGAGCAATTAAATACAAAACTAACAAAACAACACAA

             
       1666 A
          1 A

       1667 CCCACACGCA


Statistics
Matches: 40,  Mismatches: 3, Indels: 1
        0.91            0.07        0.02

Matches are distributed among these distances:
  42   18  0.45
  43   22  0.55

ACGTcount: A:0.52, C:0.23, G:0.07, T:0.17


Consensus pattern (43 bp):   
ATCTCCATGAGCAATTAAATACAAAACTAACAAAACAACACAA
Done.