Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004874.1 Corchorus capsularis cultivar CVL-1 contig04892, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6744

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90--234
22
6.6
22
76
4
89
32
12
11
44
1.77
89--234
44
3.3
44
75
3
132
32
13
10
43
1.78
610--650
2
20.0
2
90
5
64
48
0
4
46
1.23
823--864
22
1.9
22
90
0
66
33
11
0
54
1.37
1003--1126
23
5.5
22
81
5
97
37
15
8
38
1.77
1027--1126
46
2.2
46
84
7
134
38
15
8
39
1.76
1025--1316
22
13.6
20
69
18
119
34
16
9
40
1.81
1398--1566
22
7.7
22
70
10
89
33
11
10
44
1.74
1420--1607
22
8.4
24
68
19
95
32
12
10
43
1.77
1692--1786
22
4.4
21
75
11
84
35
21
7
35
1.81
1666--1786
22
5.6
21
75
8
73
37
17
7
38
1.78
1833--1921
46
1.9
46
81
4
108
38
19
10
32
1.85
1826--1965
68
2.1
66
81
5
156
40
20
7
32
1.81
1826--1966
22
6.3
22
77
9
124
39
19
7
32
1.81
2372--2430
31
1.9
31
82
6
75
45
1
18
33
1.60
2380--2440
31
2.0
31
84
6
81
45
3
19
31
1.66
3881--3911
15
2.1
15
100
0
62
58
6
12
22
1.58

Tables:   1

The End!