Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004876.1 Corchorus capsularis cultivar CVL-1 contig04894, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10127

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99--139
2
22.0
2
85
14
61
53
0
0
46
1.00
90--247
78
2.0
83
83
13
206
42
9
6
41
1.63
1995--2086
22
4.1
22
77
10
80
38
14
9
38
1.79
2006--2108
45
2.3
45
83
11
124
37
12
10
38
1.78
2030--2108
23
3.5
23
77
13
76
37
12
10
39
1.77
2006--2314
22
14.6
21
71
12
145
32
15
10
42
1.80
2138--2178
21
2.0
21
85
0
55
26
19
7
46
1.76
2420--2525
22
4.8
22
73
9
90
33
16
9
41
1.80
2396--2587
44
4.4
44
78
2
163
34
12
9
43
1.75
2439--2567
66
2.0
66
81
3
152
34
13
10
41
1.79
2672--2723
22
2.4
21
81
9
52
40
13
5
40
1.68
2897--2951
22
2.5
22
93
0
92
38
12
14
34
1.84
2893--2999
22
4.9
21
76
10
81
39
14
10
36
1.80
3168--3205
19
2.0
20
85
15
53
63
2
5
28
1.30
3513--3578
31
2.1
32
81
13
84
50
4
13
31
1.62
3521--3584
31
2.1
30
88
8
94
50
4
17
28
1.66

Tables:   1

The End!