Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004878.1 Corchorus capsularis cultivar CVL-1 contig04896, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18908
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:9603 original size:9 final size:9

Alignment explanation


    Indices: 9589--9614  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       9579 CAGTTTCGGT

                     
       9589 CGGTTTTGG
          1 CGGTTTTGG

                     
       9598 CGGTTTTGG
          1 CGGTTTTGG

                    
       9607 CGGTTTTG
          1 CGGTTTTG

       9615 ATTTATATTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.00, C:0.12, G:0.42, T:0.46


Consensus pattern (9 bp):   
CGGTTTTGG

Found at i:18639 original size:54 final size:54

Alignment explanation


    Indices: 18557--18667  Score: 213
    Period size: 54  Copynumber: 2.1  Consensus size: 54

      18547 TTCCGGCAGC

                                                                  
      18557 TCGTTGCTAGTTGACCCGCCCATCATCGACTTCCACCGCTTCTTATCCATTCTT
          1 TCGTTGCTAGTTGACCCGCCCATCATCGACTTCCACCGCTTCTTATCCATTCTT

                                         *                        
      18611 TCGTTGCTAGTTGACCCGCCCATCATCGATTTCCACCGCTTCTTATCCATTCTT
          1 TCGTTGCTAGTTGACCCGCCCATCATCGACTTCCACCGCTTCTTATCCATTCTT

               
      18665 TCG
          1 TCG

      18668 ACTAGCCACC


Statistics
Matches: 56,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  54   56  1.00

ACGTcount: A:0.14, C:0.36, G:0.14, T:0.36


Consensus pattern (54 bp):   
TCGTTGCTAGTTGACCCGCCCATCATCGACTTCCACCGCTTCTTATCCATTCTT
Done.