Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004880.1 Corchorus capsularis cultivar CVL-1 contig04898, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6497

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76--157
27
3.1
27
73
16
98
48
9
10
30
1.71
83--166
27
3.1
27
70
16
84
46
13
11
28
1.78
1635--1668
2
16.5
2
87
6
50
47
5
0
47
1.26
2048--2197
22
6.9
22
66
12
78
36
10
14
38
1.81
2094--2198
44
2.4
43
80
4
131
37
11
13
38
1.81
2094--2198
22
4.8
22
74
5
106
37
11
13
38
1.81
2266--2661
22
17.9
22
67
16
131
39
9
17
34
1.82
2826--3009
22
8.5
22
74
10
139
40
8
15
35
1.77
2883--2989
45
2.4
44
78
9
117
39
8
14
38
1.76
2981--3029
22
2.2
23
88
3
73
38
8
14
38
1.76
3051--3113
22
2.8
22
76
11
65
30
11
19
39
1.86
3029--3113
44
1.9
45
83
7
111
29
9
18
42
1.82
3049--3134
45
1.9
44
83
6
111
30
10
18
40
1.84
5407--5533
12
10.9
12
80
9
129
37
19
25
16
1.93
5474--5512
19
2.1
19
90
0
60
41
20
30
7
1.80
5462--5522
31
2.0
31
93
0
104
37
21
29
11
1.88
5787--5835
22
2.2
22
85
0
62
48
8
14
28
1.72

Tables:   1

The End!