Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004886.1 Corchorus capsularis cultivar CVL-1 contig04904, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8548

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--45
1
45.0
1
93
0
63
0
4
2
93
0.41
43--81
20
1.9
21
89
5
62
5
23
10
61
1.48
4266--4321
22
2.6
21
82
2
67
50
1
42
5
1.35
6758--6921
22
7.6
21
73
14
102
37
15
7
39
1.76
6758--6836
23
3.5
22
83
10
81
37
12
8
40
1.75
6954--7031
22
3.5
22
79
6
70
34
14
10
41
1.79
6867--7032
22
7.6
21
72
11
68
32
16
9
40
1.81
7028--7069
22
1.9
22
85
0
57
47
16
2
33
1.60
7103--7161
22
2.7
22
78
0
64
44
18
5
32
1.72
8147--8194
22
2.2
22
85
3
62
27
14
6
52
1.66
8178--8533
22
16.4
22
67
16
111
36
15
10
38
1.81

Tables:   1

The End!