Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004887.1 Corchorus capsularis cultivar CVL-1 contig04905, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19031

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--45
2
22.5
2
100
0
90
0
48
0
51
1.00
45--73
2
15.0
2
92
7
51
48
0
0
51
1.00
4865--4950
44
2.0
43
86
2
118
32
11
23
32
1.90
5177--5210
2
17.0
2
88
11
52
50
0
2
47
1.16
5177--5210
17
2.0
17
94
0
59
50
0
2
47
1.16
6137--6174
17
2.2
17
86
9
51
31
26
18
23
1.97
7261--7299
20
2.0
20
84
0
51
12
7
20
58
1.58
9893--9923
2
15.5
2
93
0
53
51
3
0
45
1.17
11015--11041
2
13.5
2
100
0
54
48
0
0
51
1.00
12427--12467
1
41.0
1
85
0
55
0
0
7
92
0.38
12429--12467
11
3.5
11
93
6
62
0
0
7
92
0.39
12427--12468
17
2.5
17
96
0
75
0
0
9
90
0.45
13007--13035
14
2.1
14
100
0
58
41
31
13
13
1.84
18953--18988
12
3.0
12
87
0
54
8
0
66
25
1.19
18960--18991
15
2.1
15
94
0
55
9
0
68
21
1.17

Tables:   1

The End!