Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004891.1 Corchorus capsularis cultivar CVL-1 contig04909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15919

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
398--463
3
22.7
3
83
11
84
34
0
1
63
1.04
884--919
6
5.8
6
90
3
54
55
0
0
44
0.99
8030--8074
15
2.9
15
83
6
54
53
13
0
33
1.40
8272--8317
19
2.5
19
76
16
51
36
4
0
58
1.18
8883--8975
47
1.9
49
89
4
145
44
5
21
29
1.74
10500--10572
29
2.5
29
77
4
85
19
31
16
32
1.94
10749--10824
29
2.6
30
82
2
91
35
13
32
18
1.89
11031--11074
15
3.0
14
83
9
52
34
0
2
63
1.07
11035--11074
20
2.0
20
85
0
53
30
0
2
67
1.04
14713--14777
21
3.2
21
70
12
64
10
3
52
33
1.52
15614--15656
19
2.2
20
95
4
79
46
16
4
32
1.67
15694--15727
17
1.9
17
88
5
50
82
0
14
2
0.79

Tables:   1

The End!