Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004894.1 Corchorus capsularis cultivar CVL-1 contig04912, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3151
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38


Found at i:2836 original size:21 final size:21

Alignment explanation


    Indices: 2810--2853  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       2800 CTTTTCTGAA

                                 
       2810 TTGCTAAACACCGCCCCATTT
          1 TTGCTAAACACCGCCCCATTT

                  **   *         
       2831 TTGCTATTCACTGCCCCATTT
          1 TTGCTAAACACCGCCCCATTT

              
       2852 TT
          1 TT

       2854 TACGTTTTTT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.18, C:0.34, G:0.09, T:0.39


Consensus pattern (21 bp):   
TTGCTAAACACCGCCCCATTT
Done.