Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004901.1 Corchorus capsularis cultivar CVL-1 contig04919, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4514
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1751 original size:13 final size:13

Alignment explanation


    Indices: 1733--1759  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1723 CTAACACTTT

                         
       1733 TTTTAAGAGACAA
          1 TTTTAAGAGACAA

                         
       1746 TTTTAAGAGACAA
          1 TTTTAAGAGACAA

             
       1759 T
          1 T

       1760 AACCATTAGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.44, C:0.07, G:0.15, T:0.33


Consensus pattern (13 bp):   
TTTTAAGAGACAA
Done.