Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004914.1 Corchorus capsularis cultivar CVL-1 contig04932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10580

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1263--1300
3
12.7
3
94
0
67
31
34
0
34
1.58
1982--2014
2
16.5
2
100
0
66
51
0
0
48
1.00
2256--2306
17
3.1
17
80
11
70
15
7
35
41
1.76
2256--2328
32
2.3
32
92
4
121
15
9
35
39
1.80
2237--2328
16
5.6
17
76
11
86
15
9
36
38
1.80
2477--2566
16
5.6
16
86
0
108
5
10
31
53
1.57
2477--2566
32
2.8
32
89
0
135
5
10
31
53
1.57
2863--2898
2
18.0
2
94
0
63
47
0
2
50
1.15
8919--8965
13
3.5
13
72
16
51
12
25
0
61
1.31
8916--8981
27
2.4
27
87
5
78
16
22
0
60
1.35
9034--9139
21
5.0
22
78
6
103
19
19
6
53
1.67
9346--9556
54
4.0
54
82
10
199
24
18
8
49
1.73
9360--9556
49
3.7
55
83
9
264
24
17
8
50
1.73
9398--9598
54
4.1
49
81
10
237
23
15
7
53
1.68
9363--9578
103
2.1
101
87
3
308
24
16
7
50
1.71
9508--9602
46
2.1
46
90
4
147
20
17
6
55
1.63
9538--9602
23
2.8
23
70
21
64
20
18
4
56
1.58
9555--9701
71
2.1
71
89
0
222
24
16
8
51
1.71
10401--10500
52
1.9
52
82
6
123
41
14
6
39
1.70

Tables:   1

The End!