Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004923.1 Corchorus capsularis cultivar CVL-1 contig04941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9147

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
376--440
27
2.4
27
84
0
76
32
18
10
38
1.85
1145--1248
29
3.5
29
68
10
75
40
17
14
27
1.88
1132--1271
60
2.3
60
83
1
183
40
16
13
29
1.87
1317--1431
60
1.9
60
87
0
167
32
17
13
36
1.89
2318--2360
3
14.3
3
100
0
86
34
0
0
65
0.93
4538--4656
16
7.6
16
79
7
118
9
20
35
35
1.84
4588--4671
7
10.5
8
69
21
52
8
23
38
29
1.84
4540--4671
32
4.2
32
81
4
153
9
21
36
33
1.85
4545--4671
48
2.7
47
81
7
143
8
21
36
33
1.84
5486--5613
16
8.0
16
74
10
118
10
19
35
34
1.86
5498--5621
32
3.9
32
88
0
176
10
20
36
32
1.87
5502--5636
32
4.3
31
85
5
121
9
21
37
31
1.86
5497--5636
64
2.2
62
81
7
163
9
21
38
30
1.85
5820--5844
7
3.6
7
100
0
50
40
0
0
60
0.97
5886--5962
17
4.2
19
75
18
74
44
0
1
54
1.08
6402--6439
14
2.7
14
88
8
51
34
5
7
52
1.53

Tables:   1

The End!