Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004924.1 Corchorus capsularis cultivar CVL-1 contig04942, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3520
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36


Found at i:779 original size:15 final size:15

Alignment explanation


    Indices: 759--790  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        749 TGGGAGACTT

                           
        759 TTAATTAAGCCGATG
          1 TTAATTAAGCCGATG

                           
        774 TTAATTAAGCCGATG
          1 TTAATTAAGCCGATG

              
        789 TT
          1 TT

        791 GTAACGTTGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38


Consensus pattern (15 bp):   
TTAATTAAGCCGATG
Done.