Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004927.1 Corchorus capsularis cultivar CVL-1 contig04945, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14342

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
197--238
20
2.1
21
86
8
61
28
7
7
57
1.52
1604--1858
48
5.3
48
82
10
288
20
11
11
56
1.65
1604--1836
97
2.4
95
83
10
294
20
11
11
56
1.66
4149--4280
50
2.6
50
100
0
264
18
14
23
43
1.87
6120--6168
23
2.0
25
92
7
84
28
24
0
46
1.53
7882--7920
19
2.1
19
100
0
78
35
20
10
33
1.86
8324--8371
24
2.0
24
91
0
78
27
12
54
6
1.61
8335--8392
24
2.4
24
85
0
71
32
6
53
6
1.54
8544--8578
18
1.9
18
94
0
61
8
14
68
8
1.38
11345--11426
40
2.0
40
100
0
164
26
34
19
19
1.96
11687--11752
30
2.2
30
89
5
98
12
7
54
25
1.63
11704--11756
15
3.5
15
76
0
61
9
5
54
30
1.55
11735--11813
36
2.2
36
81
0
95
15
6
53
25
1.65
11795--11857
18
3.3
18
71
6
54
19
3
55
22
1.57
11815--11902
21
4.2
21
69
16
65
18
6
57
17
1.60
11825--11901
24
3.5
23
66
21
65
16
6
58
18
1.59
11878--11920
18
2.4
18
80
0
50
13
4
60
20
1.51
11805--11917
42
2.8
41
89
4
158
15
7
57
19
1.61
11796--11935
39
3.5
39
80
5
145
16
6
57
20
1.61
12996--13024
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!