Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004929.1 Corchorus capsularis cultivar CVL-1 contig04947, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15735
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34


Found at i:3011 original size:6 final size:6

Alignment explanation


    Indices: 3000--3033  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

       2990 ATTGAGCAGA

                                                   
       3000 AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGAA
          1 AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGAA

       3034 TCTGGAGCTG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.53, C:0.15, G:0.32, T:0.00


Consensus pattern (6 bp):   
AGAAGC

Found at i:12544 original size:11 final size:11

Alignment explanation


    Indices: 12501--12538  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

      12491 AGTATAGATA

                *      
      12501 AAATAAATTAT
          1 AAATTAATTAT

                        
      12512 CAAA-TAATTAT
          1 -AAATTAATTAT

                       
      12523 AAATTAATTAT
          1 AAATTAATTAT

                 
      12534 AAATT
          1 AAATT

      12539 TGTTATGAAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  10    3  0.12
  11   18  0.75
  12    3  0.12

ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39


Consensus pattern (11 bp):   
AAATTAATTAT
Done.