Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004933.1 Corchorus capsularis cultivar CVL-1 contig04951, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3668
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--26  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

                                                  
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

         27 TAATACCATA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:1887 original size:2 final size:2

Alignment explanation


    Indices: 1871--1926  Score: 96
    Period size: 2  Copynumber: 28.5  Consensus size: 2

       1861 TAGGAAGTCT

                   *                                                      
       1871 TC TC TT TC T- TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                                  
       1912 TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC T

       1927 TTTGATGATC


Statistics
Matches: 51,  Mismatches: 2, Indels: 2
        0.93            0.04        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   50  0.98

ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54


Consensus pattern (2 bp):   
TC

Done.